Capneonates research An INRIA and USC collaboration
What is the research about
While survival is possible at increasingly lower gestational ages at birth, premature babies are at higher risk of developing mental disorders or learning disabilities than babies born at term. A precise identification of the developmental differences between premature and control neonates is consequently of utmost importance. Nowadays, the continuously improving quality and availability of MR systems makes it possible to precisely determine, characterize and compare brain structures such as cortical regions, or white matter fiber bundles. The objective of this project is to understand the developmental differences of premature versus normal neonates, using structural and diffusion MRI. This work consists of identifying, characterizing and meticulously studying the brain structures that are different between the two groups. To do so, we propose to join forces between the Parietal team at INRIA and the University of Southern California - USC. This project also includes studies on small animals where most of the setup difficulties of scanning neonates are present or can be reliably reproduced.
This project is funded by the "Associated Team" program of the International Relations of INRIA.
Activities Mobility n' paper notifications

Progress we made

Dr. Fillard's visit

The last few months have been quite productive for our collaboration. In March, Dr. Fillard visited USC / CHLA. During this initial visit, Dr. Fillard worked with Dr. Lepore as well as her research assistants, Yi Lao and Subhashree Raj, to: Determine which functionalities of MedINRIA needed to be adapted to neonatal data, and which new ones needed to be implemented Test the existing and new...

Paper submission to SPIE

Dr. Lepore's student, Fernando Yepes has joined the project. Since then, our two teams have implemented a pipeline for the analysis of diffusion imaging neonatal data, and we have tested the method on premature neonates and controls. We have submitted a paper to SPIE on a new averaging method to extract fiber information from clinical neonatal diffusion data, and we will soon submit an extended journal...

The focus for 2011

The focus for 2011 was primarily to adapt the diffusion analysis software of MedINRIA to neonatal data, and to implement the diffusion analysis pipeline. In addition, a lot of work went into making neonatal diffusion templates. We are currently applying the software on our data set of premature neonates. The results of this study will soon be sent to Neuroimage for review.

plan for 2012:

2012 plan

In 2012, we plan on shifting the focus toward the combination of diffusion and structural information, by: Obtaining and processing more diffusion and structural MR data on which to run our pipeline. Premature and term-born neonates are routinely scanned at CHLA. In addition, the hospital recently installed a new 3T research dedicated MR. All this data will allow us to improve our...
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Experts Collaborators &

Pierre Fillard, Ph.D

Pierre Fillard is a research scientist in computer science and medical image processing at the INRIA Parietal Team at Neurospin, near Paris, France.

Caroline Brun, Ph.D

Caroline Brun is a postdoctoral researcher in medical imaging in the PICSL laboratory, at the University of Pennsylvania, Philadelphia.

Yi Lao

Yi Lao is a research assistant in medical image processing at Professor Lepore's team at Children's Hospital of Los Angeles.

Natasha Lepore, Ph.D

Natasha Lepore is a research scientist in medical image processing at the USC and Children's hospital of Los Angeles.

Fernando Yepes Calderon

Fernando is a Ph.D student at the University of Barcelona in the schemia and neurodegeneration department of IIBB-CSIC (Spain).

Subhashree Ravichandran

Subhashree is a research assistant working with Dr. Lepore at the CHLA.  She did her bachelors in biomedical instrumentation engineering and completed a Master degree in biomedical engineering at USC.

Current Work Our articles

Template-Based Tractography for Clinical Neonatal Diffusion Imaging Data

N Lepore and F Yepes, Y Lao, A Panigrahy, R Ceschin, S Ravichandran, M D Nelson, P Fillard.

Read more: Template-Based Tractography for Clinical Neonatal Diffusion Imaging Data

A New Surface and Volume Registration

N Lepore and A Joshi, R Leahy, C Brun, J Villalon, X Pennec, AD Lee, M Barysheva, GI de Zubicaray, KMcMahon, M Wright, AW Toga, PM Thompson

Read more: A New Surface and Volume Registration

Published work archive

Template-Based Tractography for Clinical Neonatal Diffusion Imaging Data

N Lepore and F Yepes, Y Lao, A Panigrahy, R Ceschin, S Ravichandran, M D Nelson, P Fillard.

A New Surface and Volume Registration

N Lepore and A Joshi, R Leahy, C Brun, J Villalon, X Pennec, AD Lee, M Barysheva, GI de Zubicaray, KMcMahon, M Wright, AW Toga, PM Thompson
Where to find us Location and contact info
  • This e-mail address is being protected from spambots. You need JavaScript enabled to view it.
  • 4650 Sunset Blvd. Los Angeles, CA 90027 Radiology department, USA.
  • Parietal Research Team, INRIA Saclay le-de-France, Neurospin, France